Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BNC2

Cell type

Cell type Class
Liver
Cell type
LX2
NA
NA

Attributes by original data submitter

Sample

source_name
LX2
antibody
BNC2 from Sigma ref HPA018525

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using BNC2 (Sigma, HPA018525) or H3K27ac antibody (Active Motif ref 39685). TruSeq ChIP Sample Preparation Kit (BNC2) or DNBseq involving Probe-Anchor Synthesis (cPAS), linear isothermal Rolling-Circle Replication and DNA Nanoballs (DNBTM) technology, followed by high-resolution digital imaging.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
67539994
Reads aligned (%)
97.6
Duplicates removed (%)
14.2
Number of peaks
2119 (qval < 1E-05)

hg19

Number of total reads
67539994
Reads aligned (%)
96.6
Duplicates removed (%)
16.3
Number of peaks
1461 (qval < 1E-05)

Base call quality data from DBCLS SRA